This article provides a theoretical and practical analysis of the pedagogical problems arising in the process of developing students’ spiritual immunity, the underlying causes of these issues, and ways to overcome them. In particular, it explores the essence of the concept of spiritual immunity and examines the didactic, methodological, and organizational factors that hinder its formation. The study substantiates the role of innovative educational technologies, activity-based methods, and collaboration with parents and the wider community in fostering critical thinking, moral independence, and ideological stability among students in the school environment. Based on the research findings, effective pedagogical approaches and practical recommendations have been developed to strengthen students’ individual spiritual immunity.